I am using a Tet-On system to observe how over-expression of a certain gene affects cell proliferation. I have my cell line with my gene of interest and an EGFP control line. Using western blot I found that the minimum doxycycline conc. needed to get visible expression in my experimental line is about 0.25ul/ml and confirmed there is no expression in my control. I plated both cell lines and added the dox. Unfortunatly, I am seeing almost identical decreased proliferation rates in both my experimental line and control which isn’t optimal. I know doxycycline can be toxic to cells however I wasn’t expecting a conc. as low as 0.25ul/ml would have a significant effect on cell viability. Any ideas of why this might be happening? Am I using a bad assay design for these inducible systems?