Dear collegues, for my research I require of a synteny analysis to locate skin related clusters of a fish specie I am sudying. I have encounter different tools, yet most require coding. I have come across two web based tools including COGE, and simple synteny server, yet I am not sure on how to compare my data.
I wanted to ask which other tools you have found more robust and straight forward to use for beginners, and as well if the comparison is made by several genes between genomes or just a single gene?
In advance thankyou for your attention.