Which software for NGS data analysis is the most easy to work with?

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Lennart F Johansson

Dear Zoahr,

The best software to use depends on the platform you are using. For paired-end Illumina sequencing data I would recommend BWA-mem for alignment and GATK haplotypecaller for variant calling to start with.

Regards,

Lennart

Abhijeet Singh

http://ugene.net/

Okonechnikov K, Golosova O, Fursov M, the UGENE team. Unipro UGENE: a unified bioinformatics toolkit. Bioinformatics 2012 28: 1166-1167. doi:10.1093/bioinformatics/bts091

Felix L. Struebing

Hi Zoahr,

you may want to check out the Galaxy project (https://galaxyproject.org/use/). You can think of it as a kind of cloud solution for any kind of NGS analysis. It is very well documented.