What would be a good software to calculate Average Aminoacid Identity among a set of genomes?

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Qamar Ul Islam

Ana González Guerra

The average amino acid identity (AAI) is a measure of pairwise genomic relatedness that has been proposed for use in bacterial taxonomy and other fields.

Check out this tutorial as well: https://www.youtube.com/watch?v=X1LeQ3pcNow

Thanks for your feedback, but I was looking more for a tool to calculate AAI than for the definition itself. Anyway, I will have a look at the tutorial.

Thanks!

PS: EzAAI pipeline is working fine for now. In case anyone else wants to try it:Article Introducing EzAAI: a pipeline for high throughput calculatio...

C K Gomathy

Hi,

Kindly refer this link:

http://enve-omics.ce.gatech.edu/aai/

Best wishes..