What transcription factor binding site predicting tool would you recommend?

More Michal Cibulka's questions See All

What is the Enrichr 'Sca1+ genes' list?

Dear all, when I analyzed a list of genes mutated in our mouse tumor model in Enrichr, the Users Contributed List 'Sca1+genes' overlapped perfectly, but I cannot find any information about the...

06 March 2024 1,704 2 View

Determination of the supercritical conditions of the mixture?

Can anyone recommend a company or institution (write contact) that would be able to measure supercritical conditions for a liquid mixture? email: [email protected]

13 February 2024 2,183 1 View

What is the media image of social welfare institutions? What research is being done on this topic?

good day, I am conducting research on media images of (public) social welfare and media reporting of social workers. Can I ask for links to articles and studies what the media image of social...

07 February 2024 8,244 1 View

Why am I unable to open saved session file in AutoDockTools 1.5.7?

While trying to import Autodock session (AutoDockTools 1.5.7) I am receiving an error (attached below). All files work during simulations, yet it is impossible to open saved session file. mol.2...

19 December 2023 9,877 1 View

Can Thermal Shift/Differential Scanning Fluorimetry be used on soluble aggregates?

I Have Recently I have begun a project on expression and purification of a cytoplasmic protein. When running analytical Superdex 200 the protein elutes in the void volume despite the monomer being...

14 November 2023 6,876 1 View

Insurance of medical experiments in Germany?

Does an entity conducting medical experiments in Germany have to be insured against civil liability? Such a need exists in Poland and I'd like to know whether the same applies to Germany. Thanks...

25 September 2023 4,308 0 View

The order of Authors in two volumes of Proceedings is wrong. How can it be corrected?

Proceeding of the 46th Conference of the International Group for the Psychology of Mathematics Education (Vol. 3, online) Proceeding of the 46th Conference of the International Group for the...

24 August 2023 2,439 1 View

Wilcoxon matched-pairs signed-rank test vs. Wilcoxon signed rank test - choosing right statistical test ?

Hello, I have a question regarding statistics and choosing statistical test. My research question is whether certain medial procedure affects concentrations of extracellular vesicles (EVs) in...

20 August 2023 2,217 7 View

Which statistical test should i use?

Hi, i'd like to ask for advice with my paper "Comparison of correlations of stock prices before and during the pandemic". I already have the correlation coefficients calculated and shown in a...

02 April 2023 5,793 7 View

Looking for a statistician to do a meta-analysis. Interested to join?

Hello Everyone, I'm looking for a statistician to collaborate under a meta-analysis manuscript. Interested to join our research team? Please let me know on priv: [email protected]

13 March 2023 9,242 9 View

any study on protective factors of care givers of dementia and resilience ?

need to review articles on care giving in dementia and challenges faced

12 August 2024 6,424 1 View

The Optimal Experimental Approach for Gene Function Analysis?

What is the most suitable experimental setting to understand the consequences of a particular gene: (1) targeted degradation of the specific transcription factor (TF) of the gene, followed by...

04 August 2024 6,265 1 View

Which is more important: The human factor or the technological factor in combating climate change?

On a personal note, even though technology has attracted a lot of interest and funding to combat climate change, it is becoming more and more clear that taking care of the "Human Dimension" is...

02 August 2024 6,773 12 View

Is artifacts in XPS possible to build high deviation in binding energy larger than 5 eV??

Hello. Thanks for your consideration to see my question. Recently, I conducted XPS anaylsis of g-CN that is prepared from thermal polycondensation of DCDA, so-called conventional bulk-g-CN,...

30 July 2024 9,824 2 View

How to we see transcription activity of the bhlh79 family is at the N-terminal or C-terminal?

I'm a PhD Student. From Northwest Agriculture and Forestry University China. My Problem is this I start my work on bhlh79 transcription factor gene. I do my Y2H 5 time but the colonies appear on...

30 July 2024 1,412 8 View

ANCOVA for between-subject design?

Hi, I will run an experiment where reaction time will be the dependent variable, tested in 2 conditions (with the same participants). I want to control for a confounding variable (individual...

20 July 2024 1,943 1 View

Why binding energy is in positive number after performing mmpbsa?

I performed mmpbsa of protein-protein complex simulation on gromacs. My binding free energy is +166781. This complex is stable when experimentally produced in wet lab. In index.ndx I grouped...

19 July 2024 4,120 5 View

How to extract binding energy from pv.maegz file without using Schrodinger?

I have conducted virtual screening using Schrödinger on a database of 17,000 molecules. Unfortunately, I cannot use the system with the Schrödinger license at the moment. I am trying to find a way...

18 July 2024 2,881 4 View

What happens in snapTotal- seq?

What happens in snapTotal- seq? (Single-cell Total-RNA Profiling Unveils Regulatory Hubs of Transcription Factors https://www.nature.com/articles/s41467-024-50291-3) In this protocol, several RT...

18 July 2024 10,010 0 View

How to decide whether the refinement is correct or not, based on Rwp and Rexp factors by Fullprof?

One of the papers I read by Toby, where (title of the paper was "R factors in Rietveld analysis: How good is good enough?"), he tells us that to get good chi square value, you must have low Rwp,...

17 July 2024 9,668 4 View

Suruchi Singh

you can use TRANSFEC (http://gene-regulation.com/pub/programs.html) CONREAL (http://conreal.niob.knaw.nl/) or PROMO

Diana Duarte-Delgado

Which organism you work with? I am plant scientist and i have been using this:

http://planttfdb.cbi.pku.edu.cn/

https://www.ncbi.nlm.nih.gov/pubmed/27924042

Michal Cibulka

Thank you for your answer, PROMO worked quite well, but TRANSFEC gave no results...

We work with human samples, but thank you anyway :)