What topics should I study to learn Evolutionary Game Theory and Mathematical modelling based on that??

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How to measure bacterial fitness for modelling evolution?

Hi, I would like to measure the fitness of bacterial species carrying antibiotic resistance genes (two genes in total) and model the evolution and spread of these two strains (with two different...

06 July 2018 7,015 2 View

What topics to study for learning molecular simulations relevant to biology?

Good day everyone! I am interested in learning molecular simulations of bio-molecules especially bacterial proteins. I have tried to watch/read a few lectures/articles regarding this. However, I...

05 June 2018 6,184 2 View

What force field should I select for protein - ligand complex?

Hi, I am planning to study the mechanism of drug efflux membrane protein using MD simulations. I have successfully docked the ligand. Now I would like to perform MD simulations on the protein....

02 March 2018 5,388 3 View

Are there any web-based MD simulation softwares? Can I use web-based MD simulation software for publishing my results?

Hi, I would like to run MD simulation of a membrane protein using GROMACS or NAMD. However, my institute does-not have high configuration systems, and I have no financial support for purchasing...

31 December 2017 7,568 7 View

Which processor is better for running MD simulations - i7 7700 or AMD Ryzen 1700X?

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10 November 2017 1,714 7 View

How to find gi identifier in BLASTp for submitting y model to PMDB? Any databases other than PMDB for submitting modelled proteins?

Dear all, I have modelled a drug efflux protein using ITASSER. I would like to upload the model in Protein Model Database (http://www.biocomputing.it/PMDB). The accession number is...

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How to define parameters for running a MD simulation?

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07 August 2017 7,114 8 View

Generating random numbers for biological research

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03 April 2017 5,464 3 View

How to choose the method of phylogenetic tree construction?

Hi, I am trying to confirm the bacterial isolates by sequencing. I have targeted lytA gene in Streptococcus pneumoniae. I completed the alignment using CLUSTALW. Now I would like to analyse the...

31 December 2016 6,302 5 View

How to perform in silico analysis of an enzyme's action on gram positive cell wall?

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11 December 2016 6,936 1 View

How can I prepare virus for a TEM or SEM imaging?

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11 August 2024 3,115 1 View

Handling Missing Data and Building a Predictive Model with Incomplete Information ?

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10 August 2024 4,005 2 View

Is it possible to use the Fused Deposition Modeling (FDM) to additively manufacture interconnected porous structure generation of >100-200 micrometer?

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How to define an anisotropic material with asymmetric elastic compliance/stiffness matrix in ANSYS APDL?

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How can I apply boundary conditions in an orthotropic steel deck numerical model using ABAQUS software?

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08 August 2024 719 0 View

Is it possible to plot the atom-projected band structure using GPAW?

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07 August 2024 269 3 View

Should I include H atom into C3N5 when i am doing DFT modelling?

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07 August 2024 8,414 2 View

Can you suggest reliable sources defining "3D mesh" and "3D city models"?

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06 August 2024 9,986 2 View

Are there any good simple systems or platforms to recommend?

In order to show people the beauty of control and enhance enthusiasm for learning control theories, are there any good simple systems or platforms to recommend?

05 August 2024 10,034 1 View

Please explain how the plastic input value should be considered from the true stress-strain curve for the bilinear elastoplastic material model ?

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Anum Munir

Read system biology based papers and books to get an idea about mathematical modeling

Chris Rackauckas

A background in dynamical systems is essential to any mathematical modeling in biology. In fact, most game theory problems can be written as a form of dynamical system problem where you're looking for some steady state. I'd suggest picking up Nonlinear Dynamics and Chaos by Strogatz.

Sreeram Chandra Murthy Peela

Dear Mr. Chris, Thank you for the reply. However I have only a basic knowledge in mathematics. So can I understand the mathematical treatment in the book, or should I first learn some other topics?

Dear Miss Anum, Thank you for the reply. Can you suggest me a book which starts from the basic concepts? Thanks

Read this book it is introductory...

Dynamical systems really only needs knowledge of Calculus (Differential Equations) and Linear Algebra. Strogatz is an easy read that many places use to introduce the concepts to "non-math" people.

Dear Ms. Anum, Thanks for sending the book.

Dear Mr. Chris, Thank you for the reply.