In a small group of patients with mild COVID-19, nasopharyngeal/oropharyngeal swabs collected during the first week of illness showed infectious virus but not after this period despite high detected rates of SARS-CoV-2 RNA from these sites.

The duration of viral shedding varies significantly and may depend on severity. Among 137 survivors of COVID-19, viral shedding based on testing of oropharyngeal samples ranged from 8-37 days.A different study found that repeated viral RNA tests using nasopharyngeal swabs were negative in 90% of cases among 21 patients with mild illness, whereas results were positive for longer durations in patients with severe COVID-19. These studies have all used PCR detection as a proxy for viral shedding.Investigating a cohort of patients who had prolonged PCR positivity, determined that infectious virus was not present.

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