Hello,
i wish to compare the allelic frequencies of SNPs extracted from HAPMAP PROJECT between populations, i take always into consideration the GMAF extracted from dbSNP, but sometimes i find for example for SNP X A/G G ancestor GMAF T, when i wish to compare between for example ASIAN and European populations, i find for the first one GMAF G allele, for the second population T allele what can i do in this case ? Please Look at the link below (rs7214)/Shall i look at the Affymetrix LINK (+ /- chromosomal strand..)
http://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=7214
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