What are the softwares required to use AutoDock for Ligand based docking?

More Santhosh Kalash Rajendrakumar's questions See All

How can I get a project topic and a research paper related to that topic?

I am a final year Msc. Applied Statistics student. For my project I need a topic and a research paper related to the topic. Please guide me.

26 October 2023 8,853 1 View

How to interpret EIS data of my perovskite solar cell?

The interpretation of the results of EIS is divided into two parts. on one hand, some researchers insist that larger semicircle is better because it leads to larger recombination resistance...

22 August 2023 7,742 2 View

What is the degassing condition to do BET surface analysis of Zn-BDC and Co-BDC MOFs ?

Zn-BDC and Co-BDC MOFs

31 July 2023 4,773 3 View

Why does nanodrop show negative values for dye labelled ssDNA?

I prepared a ssDNA sample in nuclease free water which is dye labelled and took its concentration using a nanodrop instrument. But the instrument is giving negative values for the dye and positive...

25 April 2023 7,652 2 View

Can someone please explain me the isolation procedure for bacterial protein from the supernatant (CFS) ?

I am actually trying to isolate bacterial lipopeptides from the supernatant. i tried isolating with 1) ethyl acetate and flash 2) acid precipitation and concentration explained in most of the...

14 April 2023 234 0 View

What may be the reason for foggy/whitish perovskite film after spincoating?

After spin coating, there will be a whitish or foggy perovskite film observed. in both one-step and two-step cases, it is happening. I cant get mirror like films. perovskite : triple cation...

20 March 2023 411 1 View

I would like to calculate the gas yield of a gas generating propellant. How the gas yield can be experimentally determined on a small scale level?

Method of determination of gas yield of a composite propellant.

18 December 2022 3,382 0 View

What is the recipe to prepare MOPS-KOH buffer?

I need a buffer for RNA studies which has both sodium and potassium ions. From some research papers I found that some labs have used MOPS-KOH buffer, but it is not available to buy when I searched...

03 November 2022 1,443 3 View

Which is the best journal for Bioinformatics research publication?

As usual Good quality Peer reviewed Reasonable APC (need not sell my kidneys for a paper) or Free Rapid review Good acceptance (not reject with universal stupid Submission declined...

14 October 2022 7,291 6 View

How the pH affect on the potential during electrochemical studies?

while study of effect of pH during development of nanosensor through cyclic voltametry technique i experienced shifting of analyte peak in x-axis at different pH. what is the role of pH?

13 September 2022 8,409 0 View

How can I prepare virus for a TEM or SEM imaging?

I have virus (viral hemorrhagic septicemia virus) in suspension and the experiment will not involve cells. What level of TCID50 is preferred?

11 August 2024 3,115 1 View

Handling Missing Data and Building a Predictive Model with Incomplete Information ?

I am developing a predictive model for a water supply network that involves 20 influencing points. However, I only have historical data for 10 out of these 20 points. I would like to know how to...

10 August 2024 4,005 2 View

Is it possible to use the Fused Deposition Modeling (FDM) to additively manufacture interconnected porous structure generation of >100-200 micrometer?

Usually, additive manufacturing techniques like SEBM, SLS, and SLM are used for interconnected porous lattice structure generation with sizes of >100–200 micrometers. Can the Fused Deposition...

09 August 2024 7,892 0 View

How to define an anisotropic material with asymmetric elastic compliance/stiffness matrix in ANSYS APDL?

I need to model an anisotropic material in which the Poisson's ratio ν_12 ≠ ν_21 and so on. Therefore, the elastic compliance matrix wouldn't be a symmetric one. In ANSYS APDL, for TB,ANEL...

09 August 2024 5,048 2 View

How can I apply boundary conditions in an orthotropic steel deck numerical model using ABAQUS software?

I am trying to simulate vehicular loading on an orthotopic steel deck bridge section in ABAQUS software. The red arrow mark in the attached figure indicates the direction in which the vehicle will...

08 August 2024 719 0 View

Can you suggest reliable sources defining "3D mesh" and "3D city models"?

Dear fellow researchers, I am currently working on a paper where I need to provide a reliable reference that defines and distinguishes between 3D mesh models and 3D city models. Although I am...

06 August 2024 9,986 2 View

Are there instances where molecules with larger molecular weights exhibit greater mobility than those with smaller molecular weights?

Hi, I know that low molecular weight (MW) molecules generally tend to have higher mobility, while high molecular weight molecules tend to have lower mobility. However, in my experimental...

06 August 2024 1,495 2 View

Research Methodology - Impact of Corporate Reputation on Stakeholders Behaviors?

Please can anyone support with the survey questions based on RQ measures and propose how to do it in FMCG industry and include as well the role of brand equity Thanks

06 August 2024 949 0 View

Please explain how the plastic input value should be considered from the true stress-strain curve for the bilinear elastoplastic material model ?

I am working on Abaqus/Explicit(Quasistatic ) for the deformation of the auxetic structure model. Please explain how the plastic input value should be considered from the true stress-strain curve...

05 August 2024 454 3 View

Anyone having idea about VN primer for miRNA primer design ?

How to design VN primer to attach with universal reverse primer

05 August 2024 2,116 3 View

Shiyong Liu

Nothing else, but prodrug web server for building ligand structure....

Saravanan Parameswaran

As Mr. Karunakar Tanneeru said, MGLtools is necessary for preprocessing & job submission. In case of more than one ligand, U can use preferentially Racoon for Windows or the python script for Linux.