hi
i did western blot recently to detect synaptopodin (100kd) and actin (42kd) in mouse podocytes. The primary antibody against synaptopodin is derived from goat, while the primary antibody against actin is derived from mouse.
When i looked at the synaptopodin band, all i see is a band corresponding to 150kd (50kd bigger than expected). When i subsequently did the actin staining, i saw 2 bands: 1 corresponding to the 42kd, and another at 150kd.
All i can think of is that the 150kd band seen in synaptopodin staining could be due to synaptopodin interacting with actin, and this is further seen when actin staining result in 150kd band seen again. Although i do notice that the actin staining resulted in a little bit weaker 150kd band.
literature search shows actin reacts with synaptopodin. but i am baffled because i do incorporate 100 degrees incubation of SDS sample prior loading into wells.
also i would like to add that unlikely the additional 50kd seen in synaptopodin is due to Post translation modifications (never heard of PTM giving additional 50kD) or different isoforms of synaptopodin (seen in NCBI)
any other possibilities to account for this discrepancy?