We are sequencing stool samples of children and have got transcriptomic and metagenomic data. Just wondering about the tools to deposit the raw data online. Thank you.
I am currently submitting to the NCBI Sequence Read Archive (http://trace.ncbi.nlm.nih.gov/sra) but have also been recommended to use MG-RAST (http://metagenomics.anl.gov/).