Regards bioinformatic software?

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Jobin Thomas

Use GROMACS for the same

(https://www.gromacs.org/)

For plotting graphs n analysis you can use QTgrace.

Regards

Arpit Jain

Here are some free tools for molecular dynamics analysis:

MDsim360 - https://mdsim360.com, a new platform that lets you run MD simulations entirely online without local installation.

GROMACS - https://www.gromacs.org/

VMD (Visual Molecular Dynamics) - https://www.ks.uiuc.edu/Research/vmd/

PyMOL - https://pymol.org/

Chimera - https://www.cgl.ucsf.edu/chimera/