I have a PDB file for viral envelope and an inhibitor peptide. Now I want to see the binding of that peptide with viral envelope. Which software to use? Can anyone suggest something easier?
You can use GRAMM-X online server or ClusPro 2.0 or flexpepdock server. These are the online servers for protein-protein docking. Alternatively you can also use C-Docker of Discovery Studio but it is a commercial software. Hope this helps.