Yogesh Kumar

9 Questions 17 Answers 0 Followers

Questions related from Yogesh Kumar

Is there any available Protein-Protein Docking MD simulation protocol by Gromacs software ?

I have protein protein docking complexes of some vaccine, i would like to perform MD simulation Studies of complexes using Gromacs software, Please help if anyone have standard protocol or...

07 July 2019 6,467 4 View

Which software is good for docking virtual screening ?

I am searching for software which use 100000 compounds for docking virtual screening and freely available. Please suggest me fast and reliable software's. Thank you.

07 July 2018 9,500 9 View

How to implement chemical structure similarity search tool in local website?

Hello all, I want to embedded a chemical structure similarity search tool in my website (Database), but i was unable to do so, I know that Marvin do provide such facilities but I want some...

04 April 2018 9,545 3 View

How to identify the Pseudogene in whole genome sequence ?

I have to identify the number of pseudo gene present in genome sequence, Please suggest me what are the methods by which i can identify the pseudogene sequences. Please suggest me some...

06 June 2017 6,906 3 View

How to identify the pseudo gene by insilico method from genome?

i have to identify the number of pseudo gene present in genome, what are the methods by which i can predict and identify these pseudo sequences. Please suggest me any online or offline tool or...

04 April 2017 7,077 3 View

Is there any method to retrieve the full length protein sequence from denovo sequenced draft genome data?

By using Augustus gene predictor i have predicted the genes from draft genome but, how should i confirm that these proteins were full length or incomplete? is there any bioinformatics approach to...

05 May 2016 3,045 2 View

Removing specific multiple lines from a text file using perl - any thoughts?

I have file with 6000 line from these some are not useful i want to remove those lines by using perl program. Say input file...

04 April 2014 2,369 5 View

Can anyone tell me how to convert Fasta format (.fasta) multiple sequences into (.nhx OR nh) format for phylogenetic predictions?

I want to generate phylogenetic tree of my protein sequences by TreeBest software for that I want my sequences in these format (.nhx , .nh or .mfa ) for further analysis right now they are in...

01 January 2014 5,908 7 View

Can anyone suggest any tools or software for protein-protein interactions?

specially for host-pathogen PPIs.

10 October 2013 7,619 5 View