Dear community,

We have analyzed several bacterial species using WGS and now wanted to determine both ST (MLST) and CT (cgMLST) using SeqSphere. The ST identification has generally worked perfectly. However, the program only creates CTs for E.faecium alone; for most isolates of most species (S.aureus, E.coli, E.cloacae complex, K.pneumoniae) no results are generated here. What can be the problem? Is there a solution within SeqSphere? Or can I also use alternative ways to determine the CT based on the WGS data?

Many thanks in advance!

Antonia

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