Hi,
I'm trying to display distribution of haplotypes of a population. I have already created haplotype networks with the pie charts coloured by site (i.e. a basic haplotype network).
I wanted to show the proportion of each haplotype (i.e. haplotype frequency) on each site. However, in PopArt, the mapview shows me the piecharts which are coloured by each individual sample (rather than haplotype). Any advice on how to group those together?
Example: This is what I currently have (only a snapshot of some of the data)
Now for example, imagine for site 1-2, samples 1-2 an are the same haplotype. I would like them to be represented by the same colour. Then then for example Site 1, sample 3 is a different haplotype (represented by a 2nd colour), and then Site 3, sample 3 is another haplotype (represented by 3rd colours).
Any advice would be appreciated! Thanks!