Dear all, I hope you are well!
I would like to know if anyone has used Roche's MagNa Pure 96 system to work with plant extraction? Can anyone share a pre-treatment?
[INFO ] Running calculations on normal system... [INFO ] Beginning GB calculations with /home/bio/anaconda3/envs/gmxMMPBSA/bin/sander [INFO ] calculating complex contribution......
01 January 2024 2,255 6 View
I would like to have GPU support for GROMACS, my GPU is Intel Iris Xe Graphics, so I was recommended to use SYCL support. So I would like to ask if anyone knows how to proceed to install...
17 December 2023 9,226 5 View
I have a compound (C23N3OH27) to repeat some results with a molecular weight of 361.48. The problem is that the results are not being the same, I am evaluating cell viability (K562 and KG1) with...
07 September 2023 6,135 1 View
I have some fungus extracts to test against tumor cells (B16, K562, Kasumi-1, KG1), the only information I have about them is the amount in mg (4.37mg). How do I dilute them in DMSO? and how do I...
04 September 2023 8,847 2 View
I submited the lig_fix.mol2 file to genarate topology into a str file and got this messege error: "readmol2 warning: non-unique atoms were renamed. Now processing molecule LIG ... attype warning:...
17 July 2023 5,499 3 View
I followed the gromacs tutorial precisely and in the equilibration step I am facing this error. I tried "tc-grps = System" but occurs the same error.
29 June 2023 9,033 3 View
File "cgenff_charmm2gmx_py3_nx2.py", line 53, in import numpy as np ImportError: No module named 'numpy' I have python 3.5.2 version, NetworkX 2.3 and numpy-1.25.0 all pre installed but the...
27 June 2023 5,328 3 View
After running this step to create ligand topology for molecular dynamic simulation protein-ligand complex: python3 cgenff_charmm2gmx_py3_nx2.py ligand ligand_fix.mol2 ligand.str...
25 June 2023 677 3 View
I tried to generate charmm36 topology and parameter files for copper ions on laccase enzyme but it presents an error that says "No residue in CHARMM forcefield". So I've tried CSML Search to...
25 June 2023 5,290 1 View
Help!! my research is exploring whether thete is a relationship between perceived quality of relationship between student & supervisor and wellbeing, sense of belonging & academic...
29 April 2022 730 3 View
Hello, I am currently having problems with RNA extraction. I am using mouse liver (C57BL6J), and I have extracted RNA from mouse liver before. Before this experiment, my final RNA pellets were...
11 August 2024 7,082 3 View
I want to know more about Uranium ore deposits in world.
11 August 2024 6,720 0 View
I have been doing the m6A dot blot for a while with no improvement, I am extracting the RNA, and I can see the dots although the three biological replicas give a different reading on the memberan...
10 August 2024 8,539 5 View
How can I use the cif data obtained from rietveld refinement extracted via gsas2, for microstructural analysis using ETEX software?
09 August 2024 7,718 0 View
I've been performing RNA extraction on cotton petiole tissue for a few months now using the method described in the following paper, a derivative of the typical hot borate method...
08 August 2024 9,882 2 View
How do soil microflora interact with plant roots and influence plant nutrition, health, and productivity?
06 August 2024 9,618 3 View
Palmitic acid presence in aqueous fraction
05 August 2024 8,624 4 View
I am having an issue with my gel image where my PCR product is not appearing very bright on the gel. When I perform gel extraction, the A260/280 purity value is very low. I used the Qiagen gel...
05 August 2024 9,798 3 View
I will be with my students collecting seaweed samples in a marine farm and later we will process this tissue for RNA isolation and further sequencing. Does anyone have tips on how to collect the...
04 August 2024 501 2 View
HOW CAN I WRITE A CODE TO USE THE WAVENET TRANSFORM AS A FEATURE EXTRACTION METHOD INSTEAD OF DWT IN MATLAB?
03 August 2024 7,829 0 View