Online servers to go the protein-ligand docking

More Vishal A Mevada's questions See All

How to add control ligand in DS ligandfit?

I would like to perform the docking with Ligandfit Protocol of Discovery studio 2.1. Please let me know the procedure regarding the control ligand input. My current input receptor is 1J8J from...

01 February 2014 966 2 View

How to set up autodock for remote submission?

I would like to set up a server for docking process using autodock or autodock vina. My problem is, I have to create html/php page for submission of my ligand and receptor to carry out the...

10 November 2013 9,523 6 View

Sequence Database

I want to create the sequence database for the DNA/Protein sequences using PHP and mysql bases but could not understand the relational database details. Can anybody suggest how to create how much...

02 March 2012 9,404 9 View

In docking with GOLD

I am trying to run the docking of my drug with the protein. i got the results of the Goldscore near about -1400 i could not understand the result. Please help me to solve following questions 1....

01 February 2012 6,877 2 View

How to display the PDB file in browser using JMOL and HTML or PHP

I have created the database of the pdb structures. My web server is Linux based PHP/MYSQL based But want to display the PDB file in the browser... please let me know the right way or sample code...

01 February 2012 6,031 2 View

How to run the *.pl files on my Capnel based server

I had made on e perl file to learn and run the file on the capnel My perl file is as following #!usr/bin/perl print "Content-type:text/html \n\n"; print "\n"; print "hello vishal first perl...

01 February 2012 6,191 2 View

Autock tutorial

Hello friends,, as per the information available on the websites i am not getting the good idea realted to the autodoc k functionality is there any body with expert in autodock to help me and...

01 February 2012 3,203 3 View

I would like to create the sequence datbase like the NCBI having the Ralational database for the sequence and other details for the same sequence. Ple...

Database type is MySQL/ PHP based. also can be used PERL for the same. Please guide me to make the relational database for the same Thanking you in advance

11 December 2011 1,354 15 View

Which Scopus Journal provides the most affordable fees?

"PUBLISHING IN A SCOPUS JOURNAL" Researchers are now at a cross road. The critical need to publish in a Scopus or ISI, etc journal is ever vital. Journal Publication fees must be submitted....

10 August 2024 8,621 1 View

Seeking Advice on Viability and Execution of Undergraduate Thesis Topic?

Hello everyone, I am currently developing a thesis proposal and would appreciate your input on its viability and how to effectively carry it out. My proposed topic is: "Does the perceived threat...

10 August 2024 8,992 0 View

Who will be moral responsible for the death of thousands of people in the event of an earthquake?

Who will bear moral responsibility for the deaths of thousands of people in the event of an earthquake? Weeks and months remain before the onset of strong earthquakes that bring death to...

08 August 2024 6,134 12 View

Are there any instruments for studying time similar to the way it is in space?

There are a huge number of methods for studying objects in space, according to the senses (and not only). Mechanical, thermal, optical, acoustic, electrical, magnetic, based on particle beams,...

06 August 2024 7,102 0 View

Weak DAPI staining after immunohistochemistry - how to improve?

After immunohistochemistry of previously fixed in PFA and EtOH and then frozen 20 μm sections of zebrafish brain, DAPI staining is very weak (right) compared to the same sections stained without...

05 August 2024 9,637 2 View

Why did the authors extrapolate a phenotype that they experimentally proved in one bacterial strain across the whole genus of the organism?

I aim to be as skeptical as possible regarding whether a pair of orthologous genes results in the same phenotype in their different but related bacterial organisms under similar environmental...

05 August 2024 6,787 4 View

The Curse of Evolution and Complexity?

Brain and body mass together are positively correlated with lifespan (Hofman 1993). The duration of neural development is one of the best predictors of brain size, and conception is the best...

05 August 2024 6,247 3 View

In the case of a wound l recurrence after radical breast cancer and sentinel lymph node biopsy. Are the sentinel lymph node procedure recommended?

In the case of a wound l recurrence after radical breast cancer and sentinel lymph node biopsy. Are the sentinel lymph node procedure recommended? If no axillary lymph node dissection was not...

05 August 2024 8,056 1 View

Regarding a model for simulating battery charge and discharge, what do you consider to be high fidelity?

Regarding a model for simulating battery charge and discharge, what do you consider to be high fidelity? What is the acceptable percentage of error (regardless of the metric)? Could you suggest...

03 August 2024 5,358 0 View

Interested in a SCOPUS collaboration?

Hi RG family. My team and I are working on some SCOPUS publications and we need co-authors who are willing and capable of undertaking both qualitative and quantitative-based studies. The scope...

02 August 2024 7,843 0 View

Nutan Chauhan

Http://hexserver.loria.fr/

try this

Vishal A Mevada

Thanks Nutan,

i have one protein and som any standard drugs to dock.....but results are so bad for me...

Please help me prepare te receptor for such docking ...if possible

Raja Durai

try PatchDock server

Thanks Raja

Results are too much bad in the patch dock

Prasanth Kumar

please try GRAMM-X, ClusPro, etc

Saurabh Gayali

Try pardock http://www.scfbio-iitd.res.in/dock/pardock.jsp

Yogendra Rathore

Try DockBlaster. I am very sure that you will enjoy the results.

Fu-Jun Wang

http://cao.labshare.cn/cb-dock/