Database type is MySQL/ PHP based.
also can be used PERL for the same.
Please guide me to make the relational database for the same
Thanking you in advance
you have to do a manual curation of the details that you want to disseminate through the database.
first collect the information tabulate it in an excel sheet. mean while configure mysql/Oracle back end and if with perl, you have to configure PhP to parse.
then you can design the entry page front end using Xampp
enter the values and create the back end.
design the front end query form using html/Dhtml/Asp/java/.NET what ever you like and then you can connect the DB to front end query form..
Now you are ready to go online and shoot a paper about your DB.
PS: please go through also about the standard formats specified for data collection and representation.
go through
http://lerdorf.com/veracruz.pdf
http://dalibor.dvorski.net/downloads/docs/InstallingConfiguringDevelopingWithXAMPP.pdf
i want to create the sequence database....the sequence information as like the ncbi database
But besides that. i want to add more details in the sequences, Like functional annotaions based geneontologies.
like for seq1: metablic activites, Lipid metabolis, and others
Use Bioperl with Mysql and PHP , its an module based ..
so it will easier to have coding, Annotation ,,,while many modules are already provided in bioperl library like module of finding patters, ,,manipulating sequences, and sequence alignment you can easy extract and Link it also developing machine readable sequence annotations.,.querying the public databases ..etc
you have to do a manual curation of the details that you want to disseminate through the database.
first collect the information tabulate it in an excel sheet. mean while configure mysql/Oracle back end and if with perl, you have to configure PhP to parse.
then you can design the entry page front end using Xampp
enter the values and create the back end.
design the front end query form using html/Dhtml/Asp/java/.NET what ever you like and then you can connect the DB to front end query form..
Now you are ready to go online and shoot a paper about your DB.
PS: please go through also about the standard formats specified for data collection and representation.
My chapter in Current Protocols in Bioinformatics covers how to do this using a relational database like Oracle or mySQL.
thank you all experts,
priyanka you are given me the nice details to use the bioperl....but i am little bit poor in the perl and other ....
basically to work on the perl based online modules...have very less idea to do this thing.
if you have any good explained tutorials for the CGI-PERL based datbaase or script related information please help me do this
Santosh you have also given very nice information and realted to the php and perl connectivity....
but my problem is same here.
how to connect and eenter the data to the perl tools using the php...please help me solve it
You can download WAMP server (which has the all the feature needed by you, if you could manage to understand, it'll be of great use) by using PHPmyadmin feature in can automatically create database, and a web interface can given a using PHP Language and this database can be linked with the PHP web page
thank you , Anita and Ivan
I am having little bit knowledge of the php and my sql.
but some timesin bioinformaatics appilcation like uploading the convert the sequences from the txt file to fasta or like conversion Perl is needed to do this.
i an havin g very less idea to run such perl scripts and progtrammes using php
please let me know the simpkle and excillent procedure to follow and run such programmes in my own XAMPP
I have not worked on XAMPP, and in case of WAMP, its installation will create a folder "WAMP" in C drive, create your folder of any name say Test, in C:/wamp/www/, write a PHP program, in notepad , for example,
Save this file with .php extension (say print.php) in your folder "C:/wamp/www/test", After wards, open wamp server, this will show an semicircular icon on right side of task bar, click on the Icon then Localhost you'll see your folder name "Test" under the topic "Your Projects", click on Test will show your file, double click on file will run your page.
This is the simplest way to run your programs in learning phase, but for bigger web pages you can use dreamweaver for designing your php web pages but they should also be saved in same location "C:/wamp/www/test".
Thanks Anita,
It is my plesure to get ans from you all,
Do you have any idea to run PERL script on XAMPP or WAMP server?
If yes than lpease give simple example for that...
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