Online servers to go the protein-ligand docking

More Vishal A Mevada's questions See All

Radiogenomics Cancer Research Challenges?

what are the top 3 challenges to the advancement of the field of Radiogenomics in cancer research? is it the availability of easily available low-cost matched imaging and biosamples with clinical...

03 August 2024 5,828 4 View

What could be the expression profile of alkaline phosphatase from lactic acid bacteria?

I have already cloned ALP gene of L rhamnosus into pET22b+ vector. Cloning is already confirmed by restriction digestion and sequencing. Cloning is achieved in BL21(DE3), Codon+, Rosetta and Lemo...

02 July 2024 5,332 3 View

Some samples show very good antibacterial properties in MIC estimation, but show no result in Disk diffusion method. Why?

Our plant extract samples have shown good results in MIC estimation proving that the compound is antibacterial. But on disk diffusion no proper result was seen. What could be the possible reason...

21 April 2024 240 8 View

How to choose and analyze current research papers in order to publish my own?

I have been by my institute to publish a research paper. As I have an ECE background, I am thinking to work on IoT. So please help me in choosing my topic and how to analyze other papers in order...

21 April 2024 9,299 2 View

Smart and effective real time management of street parking?

need an literature review

01 April 2024 5,273 0 View

Present your research @ Scopus/UGC Approved International Conference on Interdisciplinary Studies in Education Research & Technology 2024?

Dear Colleagues, It is indeed a pleasure to invite you to International Conference on Interdisciplinary Studies in Education Research & Technology 2024 (ISERT – 2024)...

11 February 2024 3,728 0 View

When I am doing scf calculation for PBE0 and HSE hybrid functional. my job is automatically terminated after convergence achieved ?

this is input file and i have attached small portion of error file and scf.out file &CONTROL calculation = 'scf' pseudo_dir = './' outdir = './tmp' prefix = 'DPSC' etot_conv_thr = 1e-5...

07 February 2024 5,404 1 View

Why sometimes we get a flipped pose when compared to original co-crystalized pose in PDB after molecular docking ?

Dear RG Community, I am validating my docking protocol by re-docking the co-crystalized ligand into a defined pocket. After docking, I am getting a pose which is flipped around its axis in 180...

11 December 2023 3,572 1 View

How to make MD movie from a large (.xtc) file.?

I am working on molecular docking and dynamic simulation of protein-ligand complex, and the complex generated MD.xtc file of 4.3 gb which I am unable to open in UCSF Chimera through MD movie...

26 November 2023 8,604 1 View

Where can I get solid state UV done for LaKMnO3 (expected band gap ~1 eV) sample, as normal UV-Vis spec doesn't work at that range?

Where can I obtain solid-state UV or DRS characterization in our country? LaMnO3 with K-substitution shows lower bandgap like that of LaSrMnO3 (LSMO). This material is black in colour and doesn't...

02 November 2023 1,652 0 View

Which Scopus Journal provides the most affordable fees?

"PUBLISHING IN A SCOPUS JOURNAL" Researchers are now at a cross road. The critical need to publish in a Scopus or ISI, etc journal is ever vital. Journal Publication fees must be submitted....

10 August 2024 8,621 1 View

Seeking Advice on Viability and Execution of Undergraduate Thesis Topic?

Hello everyone, I am currently developing a thesis proposal and would appreciate your input on its viability and how to effectively carry it out. My proposed topic is: "Does the perceived threat...

10 August 2024 8,992 0 View

Who will be moral responsible for the death of thousands of people in the event of an earthquake?

Who will bear moral responsibility for the deaths of thousands of people in the event of an earthquake? Weeks and months remain before the onset of strong earthquakes that bring death to...

08 August 2024 6,134 12 View

Are there any instruments for studying time similar to the way it is in space?

There are a huge number of methods for studying objects in space, according to the senses (and not only). Mechanical, thermal, optical, acoustic, electrical, magnetic, based on particle beams,...

06 August 2024 7,102 0 View

Weak DAPI staining after immunohistochemistry - how to improve?

After immunohistochemistry of previously fixed in PFA and EtOH and then frozen 20 μm sections of zebrafish brain, DAPI staining is very weak (right) compared to the same sections stained without...

05 August 2024 9,637 2 View

Why did the authors extrapolate a phenotype that they experimentally proved in one bacterial strain across the whole genus of the organism?

I aim to be as skeptical as possible regarding whether a pair of orthologous genes results in the same phenotype in their different but related bacterial organisms under similar environmental...

05 August 2024 6,787 4 View

The Curse of Evolution and Complexity?

Brain and body mass together are positively correlated with lifespan (Hofman 1993). The duration of neural development is one of the best predictors of brain size, and conception is the best...

05 August 2024 6,247 3 View

In the case of a wound l recurrence after radical breast cancer and sentinel lymph node biopsy. Are the sentinel lymph node procedure recommended?

In the case of a wound l recurrence after radical breast cancer and sentinel lymph node biopsy. Are the sentinel lymph node procedure recommended? If no axillary lymph node dissection was not...

05 August 2024 8,056 1 View

Regarding a model for simulating battery charge and discharge, what do you consider to be high fidelity?

Regarding a model for simulating battery charge and discharge, what do you consider to be high fidelity? What is the acceptable percentage of error (regardless of the metric)? Could you suggest...

03 August 2024 5,358 0 View

Interested in a SCOPUS collaboration?

Hi RG family. My team and I are working on some SCOPUS publications and we need co-authors who are willing and capable of undertaking both qualitative and quantitative-based studies. The scope...

02 August 2024 7,843 0 View

Nutan Chauhan

Http://hexserver.loria.fr/

try this

Vishal A Mevada

Thanks Nutan,

i have one protein and som any standard drugs to dock.....but results are so bad for me...

Please help me prepare te receptor for such docking ...if possible

Raja Durai

try PatchDock server

Thanks Raja

Results are too much bad in the patch dock

Prasanth Kumar

please try GRAMM-X, ClusPro, etc

Saurabh Gayali

Try pardock http://www.scfbio-iitd.res.in/dock/pardock.jsp

Yogendra Rathore

Try DockBlaster. I am very sure that you will enjoy the results.

Fu-Jun Wang

http://cao.labshare.cn/cb-dock/