Nutan Chauhan

6 Questions 29 Answers 0 Followers

Questions related from Nutan Chauhan

Does anyone have experience with pharmacophore modelling for two same ligands in same binding pocket?

I have a protein (crystal structure) complexed with two molecules of the same ligand (inhibitor). I am trying to build a pharmacophore model for searching potential hits. But the problem is that...

11 July 2013 9,242 13 View

Is it possible to develop a pharmacophore model from DNA-PROTEIN interaction sites?

If yes, what are the software/online tools/servers for doing this?

30 May 2013 2,640 1 View

Regarding the reliability of MOE for bioinformatics

Can anybody please suggest what the status of the MOE software package is? How reliable is it in Pharmacophore modeling, QSAR and docking studies?

06 July 2012 4,994 5 View

Selecting times to run MD simulations

Is there any logic behind deciding the time and time steps to run an MD simulation? Is this related to the size of the molecule?

11 June 2012 8,754 15 View

How to make a dimer of protein?

I have a protein sequence whose str is to be predicted. This protein is a homodimer, what is the best way to model its dimer: 1. Shall I use Modeller software for homology modeling to make its...

11 April 2012 3,876 8 View

How to make homodimer of protein

I have a protein sequence whose str is to be predicted. This protein is a homodimer, what is the best way to model its dimer: 1. Shall I use Modeller software for homology modeling to make its...

06 April 2012 7,885 9 View