When I applied the cell cycle algorithm to these two samples in FlowJo, I encountered some concerns regarding the accuracy of the fit. The images include both a control and an apoptosis-inducing treatment. As expected, the apoptosis-inducing agent caused an increase in the SubG0 population. However, it also resulted in an increased number of cells in the S phase compared to the control. I believe this might be due to an incorrect fit of the model.
Do you have any suggestions on how to address this issue?
Many thanks