I want to study under an exposure of pathogen what kinds glycan modification occurs on CRD region of antibody, I do not know any particular kind of glycosylation happening in my study, so to start from scratch.
Protein glycosylation can occur on asparagine (N-linked) or on serine/threonine (O-linked). There is a multitude of approaches involving enzymatic (either proteolytic or glycolytic) treatments, liquid chromatography and mass spectrometry that can provide insight into changes (i.e. increase) in the mass of your protein and whether this is the result of glycosylation in your CDR (complementarity-determining regions).
You could for example digest your antibody with IdEs and separate the generated species (Fc and Fab) to see whether your Fab domains (that contain the CDRs) exhibits a mass increase upon exposure of the antibody to pathogen.
If this is the case, you could proceed by using an additional protease to perform peptide mapping, which will allow you to determine the site(s) of glycosylation.