Oligo

Yes, you can use Proscan: version 1.7 for promoter search and oligo6.6 for primer designing.

I would suggest, getting promoter sequence from ucsc genome browser itself. http://genome.ucsc.edu/cgi-bin/hgGateway . Select organism, recent genome assembly, search your gene of interest, select your gene from the annotation figure, then genomic sequence, there you have an option for promoter seq. it is most reliable way to get your promoter seq. Best

in Addition to above suggestions you can find more promoter information on DBTSS and ca also retrieve the sequence for the region of interest. ALso UCSC genome browser can do the same.

ANd primer designing can be done by using any Primer designing software you have already worked with

good luck

Thanks alot..i ll try this....

Rajendra Sanal Kumar.....can you explain i details how to get the promoter sequences with power point..I tries on your given webpage but from the gene annotation I did not fins myself more confortable to select the promoter sequences....

Hi !

I would like to retrieve promoter sequence of a list of genes.

Are batch query tools to retrieve sequences from database available?

please suggest..