For enumeration, you can try to do an antibiogram for each bacteria and then add the convenient antibiotic at the convenient concentration in the solid medium.
Biochemical tests related to the cell wall composition, lactic acid configuration, sugar metabolism of either organisms may be a good line of thought and start.
You can design fluorescent DNA probes or peptide nucleic acid probes targeting 16S rDNA sequence. Hybridize these probes with bacteria. This will help to study and differentiate co-cultured bacteria.