Yes I have partial sequences of the two genes. I am trying to compare between the morphological classification and the classification based on molecular sequences.
If I understand correctly, you have two sequences of DNA (not cDNA), and you want to annotate their combined function, and their relationship with similar sequences. Is it ?
I have two DNA sequences but I do not want to comapre them with similar sequence. I need to ccompare the two sequences with each others for the ability to differentiate between different species.