I need suggestion about a suitable microRNA prediction tool which can let me do input a DNA/RNA sequence. Which is a suitable options available?

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Rama Devi Mittal

There are various tools available for target micro RNA prediction.- miRDB is an online database for miRNA target prediction and functional annotations. All the targets in this case were predicted by a bioinformatics tool, Currently available and frequently used computational tools for miRNA target prediction, i.e., PicTar, TargetScan, DIANA-microT, miRanda, rna22 andPITA are outlined and various practical aspects of miRNA target analysis can be looked through internet as finding a suitable functional microRNA tool is really challenging

Amar Bahadur Singh

Please use the link provided.

http://www.benoslab.pitt.edu/comir/index2.php

Jessica Dalton-Morgan

I am planning to use the miRCat tool as part of the free software "small RNA Workbench"(srna-workbench.cmp.uea.ac.uk/)

to analyse my small RNA NGS data once it is aligned to the reference.