I am trying to make an SSR genotyping by running my PCR products on a PAGE electrophoresis

I'm using PROTEAN II xi Cell by BioRad .

As you see in the picture, bands are not migrating in a straight pattern at the top of the gel and you can see it clearly when looking at the ladders at the sides of the gel. Could anybody suggest a solution to this problem?

I have tried everything related to temperature , homogeneity, running voltage and I'm also quite sure that the two glass plates sandwiching the gel are clean ...

I assume that these bands can be scored , but the problem becomes more annoying when I want to run bigger size fragments ...

Any Ideas?

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