I have variant file in excel sheet generated from 6K SNP CHIP .Is there possible way to convert it into VCF format?Can any one help me in this regard?

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Arnoud Boot

check out this forum; they mention the code for doing this:

http://gatkforums.broadinstitute.org/gatk/discussion/3845/convert-hapmap-to-vcf-format

Abha Zaka

Thank you very much.it was really helpful

Harnoor Dhillon

I have VCF file and want to filter only SNP using Ms Excel. How should I do it