How to turn cn.MOPs tool R package data into CNV data for coding genes?

Jessica Lilian Bell @Jessica-Bell-11

23 April 2019 0 7K Report

I am not a bioinformatician and the bioinformatician is away for two months.

Is there an easy way to interpolate

cn.MOPs tool R package data into CNV information for coding genes?

thanks for any help,

Jess

Badges
Science topic

More Jessica Lilian Bell's questions See All

How to solve the problem of unconscious teeth grinding during sleep at night?

One of my friends, every night after falling asleep, his mouth would make a creaking sound after chewing something. This teeth grinding condition would continue until he woke up, and he didn't...

08 August 2024 1,366 5 View

Is Galaxy.org good to use for research for analyzing data and for publication?

Hello all, I wanted to know, can I use galaxy (USA, Europe or Australia) platform for analyzing the shotgun data, and can it be used for publication purpose as well? Thanks :)

06 August 2024 6,610 4 View

How much total RNA concentration to be extracted from sorted plasma cells from bone marrow of C57BL/6 mice for RT-PCR ?

i have sorted anti-NP specific plasma cells from bone marrow of C57BL/6 mice at certain times after immunization with variable counts and isolated total RNA using TRIZOL method for RT-PCR using...

05 August 2024 8,835 1 View

How to send my account link and how to make my account public?

Nothing

01 August 2024 755 1 View

Transfection in HEK293T cells?

Dear All, I am trying to transfect a pCDNA3.1 vector containing my gene of interest. The purpose is to figure out the localization of the protein of interest. I have fused the protein with GFP on...

31 July 2024 9,892 4 View

Should Coefficient of Variation (CV) in a biological data necessarily be below 30%?

In a research, lesion diameter due to a disease has a CV below 10%. However, in an another parameter, disease inhibition percentage (compared to control), a value derived from lesion diameter...

27 July 2024 201 0 View

Non-parametric version of the wo-way repeated measures ANOVA?

Hi, can someone please help me with their expertise. To analyse a dataset with 2 IV´s (2 levels each) and 1 DV (time - measured at 4 points, i. e. 4 DV?) I found the two-way repeated measures...

24 July 2024 3,284 6 View

Is possible to edit a gene present in a plasmid by Crispr Cas9?

Hello everyone! Someone working with Crispr Cas9. I have a question. Is it possible to edit a gene that is present on a plasmid (in this case with a low copy number)? In this case, is it possible...

22 July 2024 7,073 2 View

How to determine tannin content in fodder pellets?

22 July 2024 8,163 3 View

To what extent are artificial intelligence techniques used to enhance science learning in schools in the Arab Gulf countries???

I want researchers who specialize in studying artificial intelligence in the field of science education and those related to it to give me information about the application of the...

18 July 2024 8,320 0 View

Analysis of MHC-I and II alleles with CNVs and unassigned loci?

I am working on a dataset of MHC-I and II alleles from a bird species sequenced with Illumina. We were not able to assign alleles to loci through MHC-typer as we were over the limit of 150 alleles...

15 July 2024 182 1 View

If modulus of elasticity is divided by any inertial or dynamic pressure (1/2rhov^2), is there any dimensionless number present to represent it?

While deriving for a momentum equation with elastic stress effects, I am planning to put a ratio between elastic modulus (in Pa) and dynamic pressure (in Pa) in a simplified form. I am not...

23 June 2024 8,059 1 View

Discovering a proof for Goldbach's Conjecture ?

FOR ME incredible! Discovering a proof for Goldbach's Conjecture is a monumental achievement in the realm of number theory. I perseverance and insight have unlocked a solution to one of...

08 May 2024 4,473 6 View

Nusselt number in ansys fluent?

Hello everyone I wanna calculate the nusselt number in ansys fluent for a triple pipe geometry, and i'm not sure about the right way to do that. I f someone know the correct steps to do. Thanks in...

28 April 2024 1,280 2 View

Why do not working in prime number Pakistani mathematician...?

(i)Is so hard......? (ii)Pakistani ARE not genius ....? (iii)The population of Pakistani 24 Core and 75 years but no work in number theory special (prime number) Any one answer me special in Pakistan

04 April 2024 8,174 2 View

How to evaluate the robustness of narrow-sens heritability estimate in natural population ?

Hi everyone, I am trying to estimate the narrow-sens heritability of dispersal (propensity) in a natural population of lizard for wich I have a pedigree dataset. I used a bayesian approch, by...

14 March 2024 378 0 View

What protocol is optimal for extracting RNA from frozen tumor tissue for Next Generation Sequencing (NGS)?

hello everyone , I'm currently working on extracting RNA from frozen tumor tissue that was snap-frozen in liquid nitrogen and stored at -80°C. I've attempted a protocol involving cutting a small...

14 March 2024 8,824 0 View

Why is genetic variation important in the natural population and patterns of evolution cause a decrease in genetic variation?

12 March 2024 9,074 2 View

Does disruptive selection increase variation &what do stabilizing selection &directional selectionshave in common they bothdecrease genetic variation?

Does disruptive selection increase variation and what do stabilizing selection and directional selections have in common they both decrease genetic variation?

12 March 2024 2,528 4 View

How do diversity affect adaptation and genetic variation and environmental factors contribute to natural selection and diversity of organisms?

11 March 2024 2,496 0 View