I face this problem while pumping bead solutions through a "hydrophilic" PDMS microfluidic device. Now since the surface was made hydrophilic and PDMS is hydrophobic, I'm thinking adhesion shouldn't be a problem.
Worth mentioning also is that the flow rates I'm running the chip at are relatively high (2-3 ml/min) and the bead concentration is 1 million per ml.
Any suggestions would be greatly appreciated.