How to make phase space in MATLAB with dimensions more than three?

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MD MOE RMSD

How to calculate the RMSD values for a MD simulation using MOE?

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MD MOE RMSD

How to calculate the RMSD values for a MD simulation using MOE?

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fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

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fatal error

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fatal error

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fatal error

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Yew-Chung Chak

Hi Alireza Rezaie Zangene,

If you are talking about plotting n-dimensional phase portraits, then this article maybe helpful. MATLAB codes are also provided. 👍🏻

Article On the n-Dimensional Phase Portraits

Alejandro Pérez Riascos

The common practice is represent intersections of the phase space with a particular plane.

Chakit Arora

You can use colored surfaces for a 4-d representation. For example a heatmap actually represents 3 dimensions in a 2d plot.