I'm not sure about this question. By prediction, I know there are several NF-kB binding sites among the promoter of my interested gene, but how I know which which dimmer are they? (p65, RelB,c-Rel)
In literature, the consensus sequence of promoter activity: Hundreds of genes utilize NF-kB through variations of a nearly palindromic DNA sequence with a consensus of 5' -GGGRNWYYCC-3' (N, any base; R, purine; W, adenine or thymine; Y, pyrimidine), termed kB, found in their enhancers or promoters"