How to get the SNP flanking sequence(for Prunus mume, Japanese apricot)?

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Maxim Freidin

https://genome.ucsc.edu/

Choose Genome Browser, then type your SNP in the search field and you'll get the 500bp sequence around it.

Paul Rutland

the additional information in the attached paper gives archives of whole genome sequence which may be BLAST searched.

http://prunusmumegenome.bjfu.edu.cn

Dinesh Velayutham

Use samtools, faidx options