Hi,

I wonder if anyone knows how to create ensembles using the pdb-tools (https://wenmr.science.uu.nl/pdbtools/reference)? The protein-protein docking have been completed by InterEvDock2 where I set different constraints and did several docking runs. Because the InterEvDock2 only performs rigid docking, I would like to normalize the score of different runs using pdb-tools. For each docking run, I need to create an ensemble with a few best docking poses. However, I don't know how to implement it in pdb-tools (what specific pipeline needs to be loaded).

Any feedback is welcome. Thanks.

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