Hi everyone - I have a large dataset of aligned single-genome analysis (SGA) amino acid sequences from multiple species, tissues, and timepoints. 

I would like to visualize the differences among them qualitatively and quantitatively (mutation frequency for example).

I tried Highlighter and SeqPublish from https://www.hiv.lanl.gov/, but any other cool ideas on software or program to use?  

Thank you in advance for your help!

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