I want to work on different RNAseq data-set for Hepatocellular Carcinoma preferably at different stages of the disease. I searched for these data-sets but I couldn't find them through the cancer genome atlas. If anyone have access or know how to access the data through it, please tell me.
Hi Marwa, look at the SRA database in NCBI or go to this like directly
http://www.ncbi.nlm.nih.gov/sra/?term=Hepatocellular+Carcinoma
and if you need any support regarding the rnaseq data analysis please tell me
regards
sherif edris
Dear Dr Sherif,
Thanks a lot for your kind reply. I'll sure ask you ;) I hope you're fine and all your family there. Wish u all success :)
Regards,
http://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?study=SRP007560
http://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?study=SRP013935
http://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?study=SRP013981
Please refer to the following publication (and its data sets) to further your insight into RNAseq data from HCC:
T Lin, Y-J Shann, G-Y Chau, C-N Hsu and C-Y F Huang
Identification of latent biomarkers in hepatocellular carcinoma by ultra-deep whole-transcriptome sequencing
Oncogene (2014) 33, 4786–4794
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