Hello, I am trying to verify the efficacy of an assay method to quantify standard concentrations of Hyaluronic acid (HA). I follow the protocol which is mentioned below. It is a colorimetric method. The procedure is as follows:
1)1 ml of HA sample (known concentration) + 1ml of 0.1%SDS and vortex for 10 mins. (Treatment with SDS is to separate out the capsular HA in case of estimation from the fermentation broth. I am including this step even for estimation of standard HA just to find out if there is any loss happening in this step)
2)Centrifuge @10000rpm for 10mins
3)Add 0.4ml of supernatant to 1.6ml of absolute ethanol and keep it O/N @ 4 Deg C.
4)Centrifuge @10000 rpm for 10mins and discard the supernatant.
5)Dissolve the pellet in 1ml 0.9% NaCl.
6)Following the 5th step I go with the Carbazole method to colorimetrically estimate Hyaluronic acid (HA) @OD530.
I am skeptical on the efficacy of the above method of HA estimation as I am encountering a significant amount of loss of HA during the estimation. Based on the empirical results that I am getting, I think the loss is occurring somewhere in the 1st five steps of the aforementioned protocol. It would be great if I am told about what could be the reason for the lower estimation or where exactly is the loss occurring and also how to prevent the loss in estimation.
-Thanks & Regards