Dear all, I have a set of genes retrieved from mass spec data, where I have the level of abundance and phosphorylation expressed in Log2FC. I would like to sign up and downregulated genes and also, hippo/hyper phosphorylated genes in my network. But I am having a problem loading this data.
I try building the network using string and opening it with Cytoscape, but I couldn't find a way to insert log2FC values that way.
Then I tried downloading string data. csv, and inserting the values there. The problem is that the set of genes is quite large and the data from string is expressed as interaction modules and not as single genes anymore. So I would have to assign manually, which doesn't make any sense.
How would you guys present this data, as an interaction map flagging up and down regulate genes?
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