How can I use small RNA sequencing data at NCBI-GEO?

12 December 2014 1 4K Report

I'm going to use small RNA sequencing data from GEO available at NCBI for predicting new miRNA's, but the format of datasets at GEO are .soft and I don't know how I can extract small RNA sequences from those files.

David Cohen

Hi,

with R software, maybe you can try the solution below :

http://www2.warwick.ac.uk/fac/sci/moac/people/students/peter_cock/r/geo/

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