Ali Reza Eivazi

6 Questions 10 Answers 0 Followers

Questions related from Ali Reza Eivazi

How can I predict targets for a list of miRNAs (in Turkey) using most reliable target predictor programs?

Several articles reports that three target predictor Target Scan, Miranda and PicTar have predicted highest percentage of experimentally validated miRNA targets, but when I looked at their...

09 September 2015 9,421 5 View

How can I determine how many reads are there in a small RNA sequencin experiment?

For example, I want to know how many reads are there in this experiment available at NCBI SRA database: ERX242531.Thanks in advance

07 July 2015 7,485 13 View

Why does some miRNA sequences of miRbase seem to be protein coding RNAs?

I downloaded all aves' miRNAs from miRbase and when I blast them using BlastX against aves protein database I see that many miRNA sequences perfectly match on protein coding RNAs. But, as I know...

07 July 2015 5,654 3 View

How can I use small RNA sequencing data at NCBI-GEO?

I'm going to use small RNA sequencing data from GEO available at NCBI for predicting new miRNA's, but the format of datasets at GEO are .soft and I don't know how I can extract small RNA sequences...

12 December 2014 4,389 1 View

Why are there both poly (A) and poly (T) sequences in EST datasets?

I'm going to create contig from meleafris EST datast, searching in est file shows that both there are both poly (A) and poly (T) sequences in EST file. Is it related to the methods used by scientists?

12 December 2014 8,598 3 View

How can I extract the most differently expressed genes from a microarray dataset?

I want to extract breast cancer differently expressed genes from microarray dataset available at "http://www.ncbi.nlm.nih.gov/geo/". I downloaded dataset from Gene Expression Omnibus (GEO) and the...

06 June 2014 8,988 10 View