My whole genome sequence submission was returned by NCBI for the following reasons:
1. That the assembly may be
contaminated with sequences from one or more other organism(s)
2. The genome size of your submission falls outside of
the expected size range for the organism specified in your
submission.
Please my respected scholars, what online tool(s) can I use to remove the contaminants from the assembly genome?
This is not simple and recommended just to remove the contamination from the assembly. You should probably remove contamination before performing assembly. How you can do it would depend on what is your organism and what data you have, which you do not provide any information in your question.
Check the quality of the genome of Fastqc and if the phred value is less than 30 then perform trimming and cleaning through cutadapt. Then assemble the whole genome through Unicycler and check the assembly quality through Quast programme.
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