I have a set of SSR, SNPs, DArT markers of wheat pre-harvest sprouting resistance of about 300 in number and I wish to check their sequences, get their positions and integrate them.
Secondly, I will use the above to determine major stable loci for PHS-R by rich cluster, identify candidate genes in each QTL rich clusters and predict according to gene annotation of wheat reference genome and previous information of validated genes.
Please my major issue now i want to get the sequences of each marker how can i do that please?
Hello!
The wheat genome browser at URGI (https://urgi.versailles.inra.fr/jbrowseiwgsc/gmod_jbrowse/) has integrated the position of SNPs, SSR and DArT markers, you can check the tracks and see if the desired markers are available. Also you can just search the markers by name and see if it is located in the genome. I think is a useful tool because you find the position of many markers... This option is in the version RefSeq1, but i guess in RefSeq2 should be too. But for accessing this version you should make an account.
I hope this helps and that is clear enough??!?
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