How can I display RMSD values from Swiss dock results as viewed in UCSF chimera?

More Govardhan Kothapalli's questions See All

Combinations of plant extracts and bacterial culture treated against plant pathogens as a antagonists is allowed in India?

For research purpose

06 February 2024 6,349 1 View

Tetra ARMS PCR standardization and troubleshooting, what are the optimal conditions and reagent concentration ?

Need the suggestion and help in Tetra ARMS-PCR standardization ... Thanks in advance. 1.What are the optimal/best conditions and reagent concentration? 2.Which one we should standardize first? Tm...

09 March 2022 4,895 2 View

Why does Diamine cured rubber compounds such as AEM and HNBR show endothermic peak in a DSC experiment?

The endothermic curve starts at a temperature of 30°C itself. Peaks vary for both the AEM and HNBR compounds. The peak for AEM is at 50.2°C and for HNBR is at 123.25°C. The enthalpies vary...

30 July 2018 6,932 4 View

How do we co-relate Cross-linking density of an elastomer with its corresponding cure charateristic cure from the Moving Die Rheometer experiment?

7 different HNBR compounds are produced and to understand the chemical resistance of these compounds several liquid immersion tests at elevated temperatures (ageing) have been conducted and...

05 July 2018 5,214 5 View

Can the discriminator in Generative Adversarial Networks(GAN's) be used for classification ?

Consider a particular dataset 'X'. Assume that I have trained my deep GAN on it. Now, can we use the learnt features or weights of the discriminator( which is a neural network ) to build a more...

04 June 2018 4,723 17 View

How can I find the exact material composition of HNBR material bought from the supplier? What testing can be done?

The HNBR compound from one of the supplier does not pass any test specifications related to Heat ageing resistance, compression set and media resistance. The media used to test is the blow by...

27 March 2018 6,738 4 View

Please share your experience and the Suggestion for Whole Exome data analysis..(for case-control study)

i did whole exmoe sequencing using (NGS) ion Proton system .. i have the patients and control data... need suggestion and the pipelines filters for data analysis how to avoid and know the false...

02 August 2017 1,120 1 View

I want Isolate RNA from stored blood. Can you suggest a suitable protocol?

I have to isolate RNA from 10 ml of -20 stored whole blood. Is it better isolate RNA from whole blood or from PBMCs? Thank you..

09 November 2014 3,857 5 View

Can we freeze an entire organism in liquid nitrogen?

Very similar to how we freeze animal cells in lab using media+ DMSO.

06 August 2013 4,189 12 View

Bile salt estimation?

Can anyone recommend a protocol for quantitative estimation of bile salts in bile sample?

05 March 2012 325 2 View

How can I prepare virus for a TEM or SEM imaging?

I have virus (viral hemorrhagic septicemia virus) in suspension and the experiment will not involve cells. What level of TCID50 is preferred?

11 August 2024 3,115 1 View

Handling Missing Data and Building a Predictive Model with Incomplete Information ?

I am developing a predictive model for a water supply network that involves 20 influencing points. However, I only have historical data for 10 out of these 20 points. I would like to know how to...

10 August 2024 4,005 2 View

Is it possible to use the Fused Deposition Modeling (FDM) to additively manufacture interconnected porous structure generation of >100-200 micrometer?

Usually, additive manufacturing techniques like SEBM, SLS, and SLM are used for interconnected porous lattice structure generation with sizes of >100–200 micrometers. Can the Fused Deposition...

09 August 2024 7,892 0 View

How to define an anisotropic material with asymmetric elastic compliance/stiffness matrix in ANSYS APDL?

I need to model an anisotropic material in which the Poisson's ratio ν_12 ≠ ν_21 and so on. Therefore, the elastic compliance matrix wouldn't be a symmetric one. In ANSYS APDL, for TB,ANEL...

09 August 2024 5,048 2 View

How can I apply boundary conditions in an orthotropic steel deck numerical model using ABAQUS software?

I am trying to simulate vehicular loading on an orthotopic steel deck bridge section in ABAQUS software. The red arrow mark in the attached figure indicates the direction in which the vehicle will...

08 August 2024 719 0 View

Can you suggest reliable sources defining "3D mesh" and "3D city models"?

Dear fellow researchers, I am currently working on a paper where I need to provide a reliable reference that defines and distinguishes between 3D mesh models and 3D city models. Although I am...

06 August 2024 9,986 2 View

Are there instances where molecules with larger molecular weights exhibit greater mobility than those with smaller molecular weights?

Hi, I know that low molecular weight (MW) molecules generally tend to have higher mobility, while high molecular weight molecules tend to have lower mobility. However, in my experimental...

06 August 2024 1,495 2 View

Please explain how the plastic input value should be considered from the true stress-strain curve for the bilinear elastoplastic material model ?

I am working on Abaqus/Explicit(Quasistatic ) for the deformation of the auxetic structure model. Please explain how the plastic input value should be considered from the true stress-strain curve...

05 August 2024 454 3 View

What are the shear and normal stiffness values of an LLDPE liner in 3D numerical modeling of a stockpile?

I am seeking experimental or applicable data for the liner (LLDPE) interface in FLAC3D numerical modeling of a large stockpile. Could you please recommend suitable references? The preferred data...

05 August 2024 3,665 0 View

For an in-vitro drug release study, what molecular weight cut-off (MWCO) dialysis bag is required for a 117 kDa protein?

kindly reply me. Thanking you in advance.

05 August 2024 7,727 4 View

Mangesh Damre

http://www.cgl.ucsf.edu/chimera/current/docs/UsersGuide/midas/rmsd.html

Go through above link, may be it is useful to you.

Navaneet Chaturvedi

Open this link and go Structure-Based Sequence Alignment

http://www.cgl.ucsf.edu/chimera/current/docs/UsersGuide/tutorials/alignments.html

Govardhan Kothapalli

I was unclear while asking the question I, thanks for the reply to all of you..

Janet Juarez

Hi! I'm having the same problem! What did you do to visualize them?? I hope you remember it so many years later , lol. Thanks!!@