1) I have expressed and purified a recombinant protein. The protein has been dialysed to remove any remaining imidazole. The protein is now in milliQ water after passing through PD10 column. (The proteins calculated pI value is 5.0)

2) I am following gelation method for chitosan nano particle synthesis. Following are the sequential steps I follow for entrapment of my candidate protein:

a) Dissolving the chitosan in a solution of acetic acid and water under stirring. 

b) The pH of the solution is now adjusted to 5.0

c) The protein solution (in pure water) is now added dropwise  to my chitosan solution. (Observation: The solution turns milky white, which I guess is due to denaturation of the protein)

d) TPP solution of pH 2.0 is now added dropwise to the chitosan+protein solution in a dropwise fashion.

e) The solution of now pelleted in a lower rpm (3000 rpm) for 5 minutes. There is formation of a white pellet (of denatured proteins I guess!! as because the supernantant shows no colour formation in Bradford assay) 

Please help me in making changes in my protocol so that I can prevent denaturation of my protein candidate during synthesis and at the same time successfully entrap my protein with higher efficiency inside my nano particle.

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