I recently joined a lab and was handed a protocol and cells for transfection using fugene 6. I prepared the plasmid DNA and the GFP signal was good the first time. However ever since then, I have not been able to transfect the cells again. I ran the plasmid DNA on gel and I get multiple bands according to the enzymes I used. My cells are not dead so the DNA is not killing them either. One potential issue that I see is that these cells were passaged numerous times. Also, I think I passaged them too thin once and it took a long time for them to recover (newbie to these cells). Do you think these two potential issues could be the problem? 

I will appreciate your response. Thanks

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