I have interval.list file with columns including chr, start, end, gene_name, TSS, Strand, as shown below:
chr1 958864565 58865165 A1BG 58864865 -
chr1 9 58863035 58863635 A1BG-AS1 58863335 +
chr10 52645135 52645735 A1CF 52645435 -
If any variant fall in to listed interval, How can I add gene name, TSS and Strand info relevant to that interval as well as variant to the VCF.
Thanks,