Hemant Gupta

3 Questions 19 Answers 0 Followers

Questions related from Hemant Gupta

GATK haplotypecaller can be restricted to specific intervals using -L option, but can we add other information with interval files to the VCF?

I have interval.list file with columns including chr, start, end, gene_name, TSS, Strand, as shown below: chr1 958864565 58865165 A1BG 58864865 - chr1 9 58863035 ...

13 April 2017 2,078 1 View

How to generate the phylogenetic tree, if I have distance matrix rather than alignment ?

Anyone kindly please suggest tools for the same. I have distance matrix file and want to generate phylogenetic tree on the basis of that. It will be appreciating if someone suggest any tool which...

03 June 2016 6,073 28 View

How to identify extrachoromosomal DNA in eukaryotes using NGS aprroach?

In eukaryotes mainly: 1. Mitochondria (animals & plants),2. Chloroplast (plants)3. Extra chromosomal circular DNA (eccDNA): which are the tendom repeats in chromosomal DNA deleted from their...

19 May 2016 7,772 3 View