There is a great deal of published work on the subject of intracanal biofilm and relevant in vitro models - https://scholar.google.com/scholar?hl=en&as_sdt=0%2C10&q=intracanal+biofilm&oq=
You know in nature it is pretty rare to find pure bacterial colonies made up of one species. Microbes, along with other organisms dwell and interact at all different levels. In fact, over 100 bacterial taxa can be isolated from root canal infections mostly G -ve anaerobes, in addition to yeasts!
This paper Article A critical analysis of research methods and experimental mod...
summarises a number of methodologies, highlighting your particular question about the number of organisms.
These papers may also answer your question:
1. https://pubmed.ncbi.nlm.nih.gov/22251411/
2. https://pubmed.ncbi.nlm.nih.gov/22000451/
3. Article The mycobiome of root canal infections is correlated to the bacteriome
However, if you have the resources and time, you may try both models and compare your findings!
Endodontic root canal space harbours mainly obligate anaerobes. Studies have shown that mixed anaerobes mainly obligate followed by porphyromonas, streptococcus, fusobacterium, prevotella, e faecalis, bacteriodes, candida..these are the mainly seen microflora..so better go for a broad range for testing
Mono might give accuracy but it will be to an irrelevant endpoint. The author apparently is pursuing medication - a treatment option effective in application of biofilm composed of multiple species. @