Thrombocytopenia can be seen in PKD generally, both ADPKD and ARPKD. There are several small studies showing that thrombocytopenia is observed in PKD patients. One possible mechanism is that of liver disease as many patients with PKD have concurrent hepatic involvement, splenomegaly, ergo platelet sequestration. It does not appear to be associated with significant bleeding complications in general however.
A cross-sectional study of 42 patients with ARPKD from Scientific Reports noted a rate of thrombocytopenia of 42% in their cohort.
Reference below for further reading:
Burgmaier, K., Kilian, S., Bammens, B. et al. Clinical courses and complications of young adults with Autosomal Recessive Polycystic Kidney Disease (ARPKD). Sci Rep 9, 7919 (2019). https://doi.org/10.1038/s41598-019-43488-w